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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.4

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2023-04-02, 06:35 based on data in: /data/user/pepinme/Giuditta


        General Statistics

        Showing 308/308 rows and 9/12 columns.
        Sample Name% mCpG% mCHG% mCHHM C's% Aligned% Trimmed% Dups% GCM Seqs
        10AF_S5_R1_001
        5.0%
        10AF_S5_R1_001_val_1
        59.8%
        0.6%
        0.5%
        225.7
        44.0%
        15.0%
        32%
        14.7
        10AF_S5_R2_001
        0.7%
        10AF_S5_R2_001_val_2
        19.5%
        31%
        14.7
        10P_ER_S13_R1_001
        5.1%
        10P_ER_S13_R1_001_val_1
        57.6%
        0.6%
        0.5%
        198.4
        42.8%
        12.5%
        32%
        13.3
        10P_ER_S13_R2_001
        0.7%
        10P_ER_S13_R2_001_val_2
        16.1%
        31%
        13.3
        10R_SG_S19_R1_001
        5.0%
        10R_SG_S19_R1_001_val_1
        59.2%
        0.7%
        0.5%
        231.8
        43.3%
        13.9%
        32%
        15.3
        10R_SG_S19_R2_001
        0.7%
        10R_SG_S19_R2_001_val_2
        17.4%
        31%
        15.3
        11P_DS_S14_R1_001
        6.0%
        11P_DS_S14_R1_001_val_1
        57.6%
        0.7%
        0.5%
        188.0
        40.8%
        12.5%
        32%
        13.2
        11P_DS_S14_R2_001
        0.7%
        11P_DS_S14_R2_001_val_2
        15.6%
        31%
        13.2
        11R_GA_S20_R1_001
        7.1%
        11R_GA_S20_R1_001_val_1
        58.4%
        0.7%
        0.5%
        200.3
        38.8%
        14.8%
        33%
        15.2
        11R_GA_S20_R2_001
        0.7%
        11R_GA_S20_R2_001_val_2
        17.3%
        31%
        15.2
        12_HS_S1_R1_001
        9.5%
        12_HS_S1_R1_001_val_1
        48.7%
        0.6%
        0.5%
        217.9
        38.9%
        29.3%
        35%
        16.2
        12_HS_S1_R2_001
        0.7%
        12_HS_S1_R2_001_val_2
        23.9%
        34%
        16.2
        12_P_DGG_S22_R1_001
        9.1%
        12_P_DGG_S22_R1_001_val_1
        59.4%
        0.6%
        0.5%
        293.4
        40.2%
        31.2%
        35%
        21.1
        12_P_DGG_S22_R2_001
        0.7%
        12_P_DGG_S22_R2_001_val_2
        25.5%
        33%
        21.1
        12_R_EU_S8_R1_001
        8.8%
        12_R_EU_S8_R1_001_val_1
        58.8%
        0.6%
        0.5%
        333.6
        41.2%
        32.7%
        35%
        23.3
        12_R_EU_S8_R2_001
        0.7%
        12_R_EU_S8_R2_001_val_2
        26.6%
        33%
        23.3
        13_HS_S2_R1_001
        9.8%
        13_HS_S2_R1_001_val_1
        58.4%
        0.6%
        0.5%
        275.8
        40.6%
        32.0%
        35%
        19.6
        13_HS_S2_R2_001
        0.7%
        13_HS_S2_R2_001_val_2
        26.7%
        33%
        19.6
        13_P_FM_S23_R1_001
        10.0%
        13_P_FM_S23_R1_001_val_1
        58.4%
        0.6%
        0.5%
        218.8
        38.7%
        28.2%
        35%
        16.5
        13_P_FM_S23_R2_001
        0.7%
        13_P_FM_S23_R2_001_val_2
        22.9%
        33%
        16.5
        13_R_RF_S9_R1_001
        8.9%
        13_R_RF_S9_R1_001_val_1
        58.1%
        0.6%
        0.5%
        306.2
        39.5%
        31.2%
        35%
        22.4
        13_R_RF_S9_R2_001
        0.7%
        13_R_RF_S9_R2_001_val_2
        25.5%
        33%
        22.4
        14_HS_S3_R1_001
        8.9%
        14_HS_S3_R1_001_val_1
        59.0%
        0.6%
        0.5%
        325.1
        41.9%
        33.4%
        35%
        22.5
        14_HS_S3_R2_001
        0.7%
        14_HS_S3_R2_001_val_2
        27.5%
        33%
        22.5
        14_P_SG_S24_R1_001
        10.5%
        14_P_SG_S24_R1_001_val_1
        58.9%
        0.6%
        0.5%
        267.4
        36.5%
        31.7%
        36%
        21.5
        14_P_SG_S24_R2_001
        0.7%
        14_P_SG_S24_R2_001_val_2
        25.7%
        33%
        21.5
        14_R_MM_S10_R1_001
        9.3%
        14_R_MM_S10_R1_001_val_1
        59.0%
        0.6%
        0.5%
        412.1
        39.5%
        35.1%
        35%
        30.1
        14_R_MM_S10_R2_001
        0.7%
        14_R_MM_S10_R2_001_val_2
        29.0%
        33%
        30.1
        15_HS_S4_R1_001
        8.2%
        15_HS_S4_R1_001_val_1
        59.1%
        0.6%
        0.5%
        197.0
        41.3%
        27.3%
        35%
        13.8
        15_HS_S4_R2_001
        0.7%
        15_HS_S4_R2_001_val_2
        22.4%
        33%
        13.8
        15_P_SMR_S25_R1_001
        8.6%
        15_P_SMR_S25_R1_001_val_1
        59.2%
        0.6%
        0.5%
        364.6
        41.0%
        33.8%
        35%
        25.6
        15_P_SMR_S25_R2_001
        0.7%
        15_P_SMR_S25_R2_001_val_2
        27.8%
        33%
        25.6
        15_R_RN_S11_R1_001
        8.7%
        15_R_RN_S11_R1_001_val_1
        59.2%
        0.6%
        0.5%
        351.8
        44.6%
        36.8%
        35%
        22.7
        15_R_RN_S11_R2_001
        0.7%
        15_R_RN_S11_R2_001_val_2
        30.1%
        33%
        22.7
        16_HS_S5_R1_001
        8.2%
        16_HS_S5_R1_001_val_1
        57.9%
        0.6%
        0.5%
        210.0
        42.5%
        28.0%
        35%
        14.3
        16_HS_S5_R2_001
        0.7%
        16_HS_S5_R2_001_val_2
        23.2%
        33%
        14.3
        16_P_CV_S26_R1_001
        7.3%
        16_P_CV_S26_R1_001_val_1
        58.7%
        0.6%
        0.5%
        231.6
        45.0%
        29.3%
        35%
        14.8
        16_P_CV_S26_R2_001
        0.7%
        16_P_CV_S26_R2_001_val_2
        24.5%
        32%
        14.8
        16_R_TG_S12_R1_001
        8.7%
        16_R_TG_S12_R1_001_val_1
        58.6%
        0.6%
        0.5%
        322.0
        40.7%
        32.6%
        35%
        22.8
        16_R_TG_S12_R2_001
        0.7%
        16_R_TG_S12_R2_001_val_2
        26.6%
        33%
        22.8
        17_HS_S6_R1_001
        9.7%
        17_HS_S6_R1_001_val_1
        58.9%
        0.6%
        0.5%
        362.8
        40.6%
        34.5%
        35%
        25.8
        17_HS_S6_R2_001
        0.7%
        17_HS_S6_R2_001_val_2
        28.4%
        33%
        25.8
        17_P_FA_S27_R1_001
        9.1%
        17_P_FA_S27_R1_001_val_1
        21.1%
        0.5%
        0.4%
        154.3
        41.8%
        30.3%
        35%
        10.2
        17_P_FA_S27_R2_001
        0.7%
        17_P_FA_S27_R2_001_val_2
        23.3%
        34%
        10.2
        17_R_SN_S13_R1_001
        9.2%
        17_R_SN_S13_R1_001_val_1
        58.7%
        0.6%
        0.5%
        274.9
        41.2%
        30.9%
        35%
        19.2
        17_R_SN_S13_R2_001
        0.7%
        17_R_SN_S13_R2_001_val_2
        25.1%
        33%
        19.2
        18_HS_S7_R1_001
        10.0%
        18_HS_S7_R1_001_val_1
        58.6%
        0.6%
        0.5%
        272.2
        41.0%
        34.0%
        35%
        19.4
        18_HS_S7_R2_001
        0.7%
        18_HS_S7_R2_001_val_2
        28.3%
        33%
        19.4
        18_P_CD_S28_R1_001
        8.0%
        18_P_CD_S28_R1_001_val_1
        52.7%
        0.6%
        0.5%
        253.4
        40.7%
        28.7%
        35%
        17.8
        18_P_CD_S28_R2_001
        0.7%
        18_P_CD_S28_R2_001_val_2
        23.3%
        33%
        17.8
        18_R_GS_S14_R1_001
        8.8%
        18_R_GS_S14_R1_001_val_1
        58.8%
        0.8%
        0.7%
        201.8
        40.1%
        27.3%
        35%
        14.5
        18_R_GS_S14_R2_001
        0.7%
        18_R_GS_S14_R2_001_val_2
        22.6%
        33%
        14.5
        19_P_CS_S29_R1_001
        7.9%
        19_P_CS_S29_R1_001_val_1
        57.9%
        0.6%
        0.5%
        292.3
        42.6%
        29.7%
        35%
        19.7
        19_P_CS_S29_R2_001
        0.7%
        19_P_CS_S29_R2_001_val_2
        24.3%
        33%
        19.7
        19_R_AG_S15_R1_001
        9.2%
        19_R_AG_S15_R1_001_val_1
        58.1%
        0.6%
        0.5%
        188.3
        38.4%
        28.8%
        36%
        14.2
        19_R_AG_S15_R2_001
        0.7%
        19_R_AG_S15_R2_001_val_2
        23.5%
        33%
        14.2
        1AF_S1_R1_001
        7.1%
        1AF_S1_R1_001_val_1
        62.7%
        0.7%
        0.7%
        402.0
        38.5%
        19.9%
        34%
        30.1
        1AF_S1_R2_001
        0.7%
        1AF_S1_R2_001_val_2
        17.8%
        32%
        30.1
        1HS_S6_R1_001
        6.6%
        1HS_S6_R1_001_val_1
        63.0%
        0.7%
        0.6%
        382.4
        44.5%
        22.8%
        34%
        24.7
        1HS_S6_R2_001
        0.7%
        1HS_S6_R2_001_val_2
        20.5%
        32%
        24.7
        1MRLA_S9_R1_001
        6.5%
        1MRLA_S9_R1_001_val_1
        62.4%
        0.7%
        0.6%
        320.8
        36.2%
        18.9%
        33%
        24.8
        1MRLA_S9_R2_001
        0.6%
        1MRLA_S9_R2_001_val_2
        18.2%
        32%
        24.8
        1PEM_S1_R1_001
        6.6%
        1PEM_S1_R1_001_val_1
        61.1%
        0.7%
        0.6%
        266.9
        37.7%
        17.9%
        33%
        19.9
        1PEM_S1_R2_001
        0.6%
        1PEM_S1_R2_001_val_2
        17.3%
        31%
        19.9
        1RDAS_S11_R1_001
        6.8%
        1RDAS_S11_R1_001_val_1
        63.0%
        0.6%
        0.6%
        316.0
        39.4%
        22.1%
        33%
        22.7
        1RDAS_S11_R2_001
        0.6%
        1RDAS_S11_R2_001_val_2
        20.4%
        32%
        22.7
        20_P_ES_S30_R1_001
        8.1%
        20_P_ES_S30_R1_001_val_1
        54.0%
        0.6%
        0.5%
        253.9
        40.9%
        28.9%
        35%
        17.9
        20_P_ES_S30_R2_001
        0.7%
        20_P_ES_S30_R2_001_val_2
        23.7%
        33%
        17.9
        21_P_ME_S31_R1_001
        9.2%
        21_P_ME_S31_R1_001_val_1
        57.9%
        0.6%
        0.5%
        339.4
        41.7%
        32.3%
        35%
        23.4
        21_P_ME_S31_R2_001
        0.7%
        21_P_ME_S31_R2_001_val_2
        26.9%
        33%
        23.4
        22_P_CE_S32_R1_001
        8.2%
        22_P_CE_S32_R1_001_val_1
        58.5%
        0.6%
        0.5%
        292.4
        40.9%
        31.0%
        35%
        20.7
        22_P_CE_S32_R2_001
        0.7%
        22_P_CE_S32_R2_001_val_2
        25.8%
        33%
        20.7
        23_P_FA_S33_R1_001
        7.9%
        23_P_FA_S33_R1_001_val_1
        58.6%
        0.6%
        0.5%
        310.5
        42.3%
        31.0%
        35%
        21.0
        23_P_FA_S33_R2_001
        0.7%
        23_P_FA_S33_R2_001_val_2
        25.3%
        33%
        21.0
        2AF_S2_R1_001
        7.1%
        2AF_S2_R1_001_val_1
        63.5%
        0.7%
        0.6%
        395.1
        41.3%
        22.1%
        34%
        27.6
        2AF_S2_R2_001
        0.7%
        2AF_S2_R2_001_val_2
        19.7%
        32%
        27.6
        2HS_S7_R1_001
        6.6%
        2HS_S7_R1_001_val_1
        61.9%
        0.7%
        0.7%
        361.6
        38.3%
        18.7%
        34%
        27.2
        2HS_S7_R2_001
        0.7%
        2HS_S7_R2_001_val_2
        16.9%
        32%
        27.2
        2MRPF_S10_R1_001
        6.7%
        2MRPF_S10_R1_001_val_1
        62.5%
        0.6%
        0.6%
        305.3
        39.0%
        20.6%
        33%
        22.0
        2MRPF_S10_R2_001
        0.6%
        2MRPF_S10_R2_001_val_2
        19.7%
        32%
        22.0
        2PSL_S2_R1_001
        6.6%
        2PSL_S2_R1_001_val_1
        63.6%
        0.7%
        0.6%
        303.2
        40.2%
        21.7%
        33%
        21.3
        2PSL_S2_R2_001
        0.6%
        2PSL_S2_R2_001_val_2
        20.3%
        32%
        21.3
        2RDAM_S12_R1_001
        5.5%
        2RDAM_S12_R1_001_val_1
        63.3%
        0.7%
        0.7%
        285.5
        36.0%
        17.8%
        33%
        22.2
        2RDAM_S12_R2_001
        0.6%
        2RDAM_S12_R2_001_val_2
        17.3%
        32%
        22.2
        3HS_S8_R1_001
        7.1%
        3HS_S8_R1_001_val_1
        62.7%
        0.7%
        0.6%
        326.3
        40.7%
        19.7%
        34%
        23.2
        3HS_S8_R2_001
        0.7%
        3HS_S8_R2_001_val_2
        17.6%
        32%
        23.2
        3PDR_S3_R1_001
        6.3%
        3PDR_S3_R1_001_val_1
        61.7%
        0.6%
        0.6%
        322.6
        37.9%
        19.6%
        33%
        23.9
        3PDR_S3_R2_001
        0.6%
        3PDR_S3_R2_001_val_2
        19.1%
        32%
        23.9
        3RAM_S13_R1_001
        7.2%
        3RAM_S13_R1_001_val_1
        62.9%
        0.6%
        0.6%
        304.8
        36.7%
        19.7%
        33%
        23.4
        3RAM_S13_R2_001
        0.6%
        3RAM_S13_R2_001_val_2
        18.5%
        32%
        23.4
        3_MR_MF_S16_R1_001
        9.1%
        3_MR_MF_S16_R1_001_val_1
        57.8%
        0.6%
        0.5%
        303.9
        41.4%
        31.2%
        35%
        21.2
        3_MR_MF_S16_R2_001
        0.7%
        3_MR_MF_S16_R2_001_val_2
        25.7%
        33%
        21.2
        4AF_S4_R1_001
        6.9%
        4AF_S4_R1_001_val_1
        63.1%
        0.7%
        0.7%
        358.5
        39.8%
        18.9%
        34%
        26.1
        4AF_S4_R2_001
        0.7%
        4AF_S4_R2_001_val_2
        17.0%
        32%
        26.1
        4HS_S9_R1_001
        7.2%
        4HS_S9_R1_001_val_1
        62.6%
        0.7%
        0.6%
        380.6
        38.9%
        20.5%
        34%
        28.3
        4HS_S9_R2_001
        0.7%
        4HS_S9_R2_001_val_2
        17.9%
        32%
        28.3
        4PSR_S4_R1_001
        6.4%
        4PSR_S4_R1_001_val_1
        62.8%
        0.7%
        0.6%
        320.0
        38.1%
        20.3%
        33%
        23.6
        4PSR_S4_R2_001
        0.6%
        4PSR_S4_R2_001_val_2
        19.6%
        32%
        23.6
        4RRS_S14_R1_001
        6.6%
        4RRS_S14_R1_001_val_1
        61.2%
        0.7%
        0.6%
        257.3
        35.4%
        18.0%
        33%
        20.5
        4RRS_S14_R2_001
        0.6%
        4RRS_S14_R2_001_val_2
        17.5%
        32%
        20.5
        4_MR_CL_S17_R1_001
        7.5%
        4_MR_CL_S17_R1_001_val_1
        59.7%
        0.8%
        0.7%
        472.1
        44.2%
        37.1%
        35%
        30.8
        4_MR_CL_S17_R2_001
        0.7%
        4_MR_CL_S17_R2_001_val_2
        30.5%
        33%
        30.8
        5AF_S5_R1_001
        6.2%
        5AF_S5_R1_001_val_1
        62.2%
        0.7%
        0.6%
        339.5
        43.6%
        20.0%
        33%
        22.4
        5AF_S5_R2_001
        0.7%
        5AF_S5_R2_001_val_2
        18.2%
        32%
        22.4
        5HS_S10_R1_001
        6.8%
        5HS_S10_R1_001_val_1
        63.5%
        0.7%
        0.6%
        359.5
        40.7%
        20.6%
        34%
        25.4
        5HS_S10_R2_001
        0.7%
        5HS_S10_R2_001_val_2
        18.6%
        32%
        25.4
        5PAM_S5_R1_001
        6.8%
        5PAM_S5_R1_001_val_1
        61.7%
        0.6%
        0.6%
        313.8
        37.8%
        20.6%
        33%
        23.3
        5PAM_S5_R2_001
        0.6%
        5PAM_S5_R2_001_val_2
        19.5%
        32%
        23.3
        5ROCA_S15_R1_001
        5.9%
        5ROCA_S15_R1_001_val_1
        62.6%
        0.7%
        0.6%
        298.8
        38.7%
        20.0%
        33%
        21.6
        5ROCA_S15_R2_001
        0.6%
        5ROCA_S15_R2_001_val_2
        19.2%
        32%
        21.6
        5_MR_PC_S18_R1_001
        10.3%
        5_MR_PC_S18_R1_001_val_1
        58.3%
        0.6%
        0.5%
        316.1
        38.0%
        32.4%
        35%
        24.3
        5_MR_PC_S18_R2_001
        0.7%
        5_MR_PC_S18_R2_001_val_2
        26.6%
        33%
        24.3
        6AF_S1_R1_001
        6.2%
        6AF_S1_R1_001_val_1
        58.1%
        0.7%
        0.5%
        254.2
        40.0%
        14.5%
        32%
        18.3
        6AF_S1_R2_001
        0.7%
        6AF_S1_R2_001_val_2
        17.8%
        31%
        18.3
        6PAG_S6_R1_001
        6.6%
        6PAG_S6_R1_001_val_1
        62.7%
        0.7%
        0.6%
        266.9
        34.9%
        17.2%
        33%
        21.5
        6PAG_S6_R2_001
        0.6%
        6PAG_S6_R2_001_val_2
        16.7%
        32%
        21.5
        6R_FD_S15_R1_001
        6.0%
        6R_FD_S15_R1_001_val_1
        58.6%
        0.7%
        0.5%
        179.6
        40.6%
        12.6%
        32%
        12.9
        6R_FD_S15_R2_001
        0.7%
        6R_FD_S15_R2_001_val_2
        15.6%
        31%
        12.9
        6_MR_PM_S19_R1_001
        8.6%
        6_MR_PM_S19_R1_001_val_1
        58.7%
        0.6%
        0.5%
        223.3
        40.7%
        28.1%
        35%
        15.9
        6_MR_PM_S19_R2_001
        0.7%
        6_MR_PM_S19_R2_001_val_2
        22.8%
        33%
        15.9
        7AF_S2_R1_001
        5.6%
        7AF_S2_R1_001_val_1
        59.0%
        0.7%
        0.5%
        205.6
        39.2%
        13.4%
        32%
        15.2
        7AF_S2_R2_001
        0.7%
        7AF_S2_R2_001_val_2
        15.9%
        31%
        15.2
        7PIL_S7_R1_001
        6.5%
        7PIL_S7_R1_001_val_1
        63.1%
        0.7%
        0.6%
        369.1
        38.4%
        21.8%
        33%
        26.9
        7PIL_S7_R2_001
        0.6%
        7PIL_S7_R2_001_val_2
        20.8%
        32%
        26.9
        7R_FV_S16_R1_001
        5.9%
        7R_FV_S16_R1_001_val_1
        58.2%
        0.7%
        0.5%
        125.6
        40.5%
        10.9%
        33%
        9.0
        7R_FV_S16_R2_001
        0.7%
        7R_FV_S16_R2_001_val_2
        13.6%
        31%
        9.0
        7_MR_RC_S20_R1_001
        9.3%
        7_MR_RC_S20_R1_001_val_1
        58.5%
        0.6%
        0.5%
        178.0
        40.2%
        26.7%
        35%
        12.8
        7_MR_RC_S20_R2_001
        0.7%
        7_MR_RC_S20_R2_001_val_2
        21.9%
        33%
        12.8
        8AF_S3_R1_001
        5.0%
        8AF_S3_R1_001_val_1
        59.9%
        0.7%
        0.5%
        203.1
        42.0%
        13.1%
        32%
        13.9
        8AF_S3_R2_001
        0.7%
        8AF_S3_R2_001_val_2
        16.2%
        31%
        13.9
        8PSN_S8_R1_001
        6.5%
        8PSN_S8_R1_001_val_1
        62.3%
        0.6%
        0.6%
        381.5
        39.3%
        22.6%
        33%
        27.1
        8PSN_S8_R2_001
        0.6%
        8PSN_S8_R2_001_val_2
        21.6%
        32%
        27.1
        8R_BM_S17_R1_001
        4.9%
        8R_BM_S17_R1_001_val_1
        59.1%
        0.6%
        0.5%
        198.0
        42.9%
        13.8%
        32%
        13.2
        8R_BM_S17_R2_001
        0.7%
        8R_BM_S17_R2_001_val_2
        17.5%
        31%
        13.2
        8_MR_MA_S21_R1_001
        10.1%
        8_MR_MA_S21_R1_001_val_1
        58.4%
        0.6%
        0.5%
        285.7
        40.1%
        32.3%
        35%
        20.8
        8_MR_MA_S21_R2_001
        0.7%
        8_MR_MA_S21_R2_001_val_2
        26.9%
        33%
        20.8
        9AF_S4_R1_001
        5.0%
        9AF_S4_R1_001_val_1
        59.9%
        0.6%
        0.5%
        258.0
        43.3%
        15.5%
        32%
        17.1
        9AF_S4_R2_001
        0.7%
        9AF_S4_R2_001_val_2
        18.9%
        31%
        17.1
        9P_PA_S12_R1_001
        6.0%
        9P_PA_S12_R1_001_val_1
        59.3%
        0.6%
        0.5%
        201.4
        41.2%
        14.0%
        32%
        14.2
        9P_PA_S12_R2_001
        0.7%
        9P_PA_S12_R2_001_val_2
        16.9%
        31%
        14.2
        9R_MV_S18_R1_001
        5.1%
        9R_MV_S18_R1_001_val_1
        58.3%
        0.6%
        0.5%
        216.7
        44.8%
        14.9%
        32%
        14.0
        9R_MV_S18_R2_001
        0.7%
        9R_MV_S18_R2_001_val_2
        19.0%
        31%
        14.0
        HS10_S10_R1_001
        7.3%
        HS10_S10_R1_001_val_1
        59.0%
        0.7%
        0.5%
        258.9
        39.0%
        16.1%
        33%
        19.3
        HS10_S10_R2_001
        0.7%
        HS10_S10_R2_001_val_2
        18.9%
        31%
        19.3
        HS11_S11_R1_001
        5.8%
        HS11_S11_R1_001_val_1
        58.1%
        0.6%
        0.5%
        173.4
        40.8%
        12.3%
        32%
        12.3
        HS11_S11_R2_001
        0.7%
        HS11_S11_R2_001_val_2
        16.1%
        31%
        12.3
        HS6_S6_R1_001
        5.4%
        HS6_S6_R1_001_val_1
        59.0%
        0.7%
        0.5%
        211.1
        41.4%
        13.1%
        32%
        14.6
        HS6_S6_R2_001
        0.7%
        HS6_S6_R2_001_val_2
        16.2%
        31%
        14.6
        HS7_S7_R1_001
        7.2%
        HS7_S7_R1_001_val_1
        58.8%
        0.6%
        0.5%
        419.2
        40.0%
        20.6%
        33%
        30.1
        HS7_S7_R2_001
        0.7%
        HS7_S7_R2_001_val_2
        23.9%
        31%
        30.1
        HS8_S8_R1_001
        5.4%
        HS8_S8_R1_001_val_1
        59.5%
        0.7%
        0.5%
        210.2
        42.3%
        13.5%
        32%
        14.3
        HS8_S8_R2_001
        0.7%
        HS8_S8_R2_001_val_2
        17.6%
        31%
        14.3
        HS9_S9_R1_001
        6.2%
        HS9_S9_R1_001_val_1
        58.6%
        0.6%
        0.5%
        275.3
        41.5%
        16.1%
        32%
        19.1
        HS9_S9_R2_001
        0.7%
        HS9_S9_R2_001_val_2
        19.4%
        31%
        19.1

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.

        Alignment Rates

        loading..

        Strand Alignment

        All samples were run with --directional mode; alignments to complementary strands (CTOT, CTOB) were ignored.

        loading..

        Cytosine Methylation

        loading..

        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

        loading..

        Cutadapt

        Cutadapt is a tool to find and remove adapter sequences, primers, poly-Atails and other types of unwanted sequence from your high-throughput sequencing reads.

        This plot shows the number of reads with certain lengths of adapter trimmed. Obs/Exp shows the raw counts divided by the number expected due to sequencing errors. A defined peak may be related to adapter length. See the cutadapt documentation for more information on how these numbers are generated.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        154 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        No samples found with any adapter contamination > 0.1%